Genome Analysis and its Innovations in Sustainable Crop Production

Faculty

Faculty of Agricultural Science and Landscape Architecture

Version

Version 1 of 31.08.2025.

Module identifier

44M0523

Module level

Master

Language of instruction

English

ECTS credit points and grading

5.0

Module frequency

only summer term

Duration

1 semester

 

 

Brief description

Plant breeding is a historical discipline, which laid the foundations of modern agriculture. In the last decades, we have experienced a revolution in genome analyses methods that enable the dissection and quantification of the breeding traits at single gene up to the genome levels. These advances have changed the paradigm of breeding science and offered sophisticated methods to improve traits and selection at molecular level for the development of sustainable crop varieties. The primary aim of this module is to employ the innovations of genome analyses techniques in applied plant breeding for sustainable crop production.

Teaching and learning outcomes

  • Genome; the centre of heredity
    • Genetic vs epigenetic trait variations
    • Genome structure and organization in plants
  • Genome analysis techniques
    • DNA cloning and PCR
    • DNA-marker
    • High-through-put genotyping
    • Next generation sequencing
  • Genome analyses in applied plant breeding
    • Genetic linkage analysis
    • Gene-by-trait association (QTL and GWAS) analyses
    • Marker (gene) assisted selection/ precision breeding
    • Positional mapping and isolation of genes
  • Genomic innovations in sustainable crop production
    • Creation and utilization of biodiversity
    • Disease resistance
    • Drought and heat stress tolerance
    • Bio-fortification, yield and quality
  • Genome-editing: a newer tool for sustainability
    • CRISPR/Cas system
    • Potential applications in sustainable crop production

Overall workload

The total workload for the module is 150 hours (see also "ECTS credit points and grading").

Teaching and learning methods
Lecturer based learning
Workload hoursType of teachingMedia implementationConcretization
30LecturePresence-
30PracticePresence-
Lecturer independent learning
Workload hoursType of teachingMedia implementationConcretization
30Preparation/follow-up for course work-
40Exam preparation-
20Study of literature-
Graded examination
  • Portfolio exam or
  • oral exam or
  • Written examination
Ungraded exam
  • Regular participation
Remark on the assessment methods

Standard graded examination: Portfolio with written exam, 2 hours (max. 80 points) + presentation (max. 20 points)

An alternative examination may be selected by the examiner and announced at the beginning of the course.

Regular participation in the practical course is required but ungraded.

Exam duration and scope

Written exam - 2 hours

Presentation - approx. 20 minutes

Regular participation - minimum 80% of total hours

Recommended prior knowledge

Basic knowledge of the subjects of genomics and crop production are helpful but not required.

Knowledge Broadening

Students understand the relationship between genome analysis and sustainable crop production and can identify important genome analysis techniques and their uses in applied plant breeding. They can describe measures for genomic innovations that lead to an increase in specific facets of sustainability in crop production.

Knowledge deepening

Students can argue, according to the specific situation, which genomic measures are suitable for achieving specific sustainable crop production goals.

Knowledge Understanding

Students can formulate problem and hypotheses in applied plant breeding for sustainable crop production. They can employ innovative genome analyses techniques to test and evaluate their hypotheses.

Application and Transfer

Students develop an understanding of how innovative genome analyses techniques can promote sustainable crop production and reflect on experimental findings.

Communication and Cooperation

Students can present innovative concepts for genome analyses techniques in applied plant breeding for sustainable crop production on a scientific basis and discuss them with experts.

Academic Self-Conception / Professionalism

Students evaluate and deliberate deduced recommendations genome analyses techniques in applied plant breeding for sustainable crop production.

Literature

as assigned during the semester

Applicability in study programs

  • Land Use Transformation
    • Land Use Transformation M.Sc. (01.03.2026)

  • Applied Livestock Sciences
    • Applied Livestock Sciences M.Sc. (01.09.2025)

  • Applied Plant Sciences M.Sc. (01.09.2025)
    • Applied Plant Sciences M.Sc. (01.09.2025)

    Person responsible for the module
    • Naz, Ali Ahmad
    Teachers
    • Naz, Ali Ahmad